Index

A

align_to_z() (in module PoreAnalyser.hole_analysis)

analysis() (in module PoreAnalyser.hole_analysis) atom (class in PoreAnalyser.ProbeParticleEllipsoid.ellipse_lib)

C

conductance_estimation() (PoreAnalyser.PoreAnalysis method)

D

dist_ellipse_vdwSphere() (in module PoreAnalyser.ProbeParticleEllipsoid.ellipse_lib)

distance_ellipse() (in module PoreAnalyser.ProbeParticleEllipsoid.ellipse_lib)

E

ellipse (class in PoreAnalyser.ProbeParticleEllipsoid.ellipse_lib)

ellipsoid_analysis() (PoreAnalyser.PoreAnalysis method) ellipsoid_pathway() (in module PoreAnalyser.ProbeParticleEllipsoid.ellipsoid_optimisation)

H

hole_analysis() (in module PoreAnalyser.hole_analysis) (PoreAnalyser.PoreAnalysis method)

I

insert_ellipse() (in module PoreAnalyser.ProbeParticleEllipsoid.ellipsoid_optimisation)

M

module PoreAnalyser PoreAnalyser.hole_analysis PoreAnalyser.ProbeParticleEllipsoid.ellipse_lib PoreAnalyser.ProbeParticleEllipsoid.ellipsoid_optimisation

N

neighbor_vec() (in module PoreAnalyser.ProbeParticleEllipsoid.ellipsoid_optimisation)

P

pathway_visualisation() (PoreAnalyser.PoreAnalysis method) penalty_overlap_4dim() (in module PoreAnalyser.ProbeParticleEllipsoid.ellipsoid_optimisation) plt_pathway_ellipsoid() (PoreAnalyser.PoreAnalysis method) plt_trajectory_average() (PoreAnalyser.PoreAnalysis method) PoreAnalyser module

PoreAnalyser.hole_analysis module PoreAnalyser.ProbeParticleEllipsoid.ellipse_lib module PoreAnalyser.ProbeParticleEllipsoid.ellipsoid_optimisation module PoreAnalysis (class in PoreAnalyser)